If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 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'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 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'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ), 'gf_id' => 'HOM05D000607', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000607' ), 'data_identifier' => 'HOM05D000607', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000607', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '932', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11630' => 'bna', 'A02p11640' => 'bna', 'A02p11650' => 'bna', 'A03p15560' => 'bna', 'A06p34650' => 'bna', 'A09p06780' => 'bna', 'A09p14040' => 'bna', 'A10p00490' => 'bna', 'A10p10240' => 'bna', 'A10p10250' => 'bna', 'Aa31LG11G3130' => 'aar', 'Aa31LG1G10780' => 'aar', 'Aa31LG3G8020' => 'aar', 'Aa31LG3G8030' => 'aar', 'Aa31LG3G8040' => 'aar', 'Aa31LG3G8050' => 'aar', 'Aa31LG3G8990' => 'aar', 'Aa31LG3G9000' => 'aar', 'Aa31LG3G9010' => 'aar', 'Actinidia02018' => 'ach', 'Actinidia02820' => 'ach', 'Actinidia08584' => 'ach', 'Actinidia10065' => 'ach', 'Actinidia10605' => 'ach', 'Actinidia20156' => 'ach', 'Actinidia28349' => 'ach', 'Actinidia31820' => 'ach', 'Actinidia33732' => 'ach', 'Actinidia34115' => 'ach', 'Actinidia34160' => 'ach', 'Ah.04g161800' => 'amhyb', 'Ah.07g206540' => 'amhyb', 'Ah.12g051880' => 'amhyb', 'Ah.13g069190' => 'amhyb', 'AL1G10920' => 'aly', 'AL2G11150' => 'aly', 'AL2G11160' => 'aly', 'AL6G35040' => 'aly', 'AL8G27170' => 'aly', 'AL8G27180' => 'aly', 'AL8G27190' => 'aly', 'AL8G27200' => 'aly', 'Aqoxy5G04072' => 'aox', 'Aqoxy7G00358' => 'aox', 'arahy.Tifrunner.gnm1.ann1.9309CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9AH332' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZQ4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC20WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B91B55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EAU3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZ7NE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB6B2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZYG19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE8UNX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1BTB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1W8DH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHK7TD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1DXQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3EA7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3TF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95N5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQC7PL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U9GE21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMC6JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X2BKCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XL28RF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y27KNC' => 'arhy', 'AT1G01490' => 'ath', 'AT1G63950' => 'ath', 'AT1G63960' => 'ath', 'AT5G23760' => 'ath', 'AT5G52740' => 'ath', 'AT5G52750' => 'ath', 'AT5G52760' => 'ath', 'AT5G52770' => 'ath', 'ATR0620G004' => 'atr', 'ATR1126G032' => 'atr', 'ATR1126G057' => 'atr', 'Atru.chr1.346_Atru.chr1.347_Atru.chr1.348' => 'acertr', 'Atru.chr1.349' => 'acertr', 'Atru.chr1.456' => 'acertr', 'Atru.chr5.3433' => 'acertr', 'Atru.chr5.557' => 'acertr', 'Atru.chr5.573' => 'acertr', 'Atru.chr9.2122' => 'acertr', 'Atru.chr9.2213' => 'acertr', 'Atru.chr9.2215' => 'acertr', 'Atru.ctg942.40' => 'acertr', 'Atru.ctg97_1.33' => 'acertr', 'Atru.ctg97_1.34' => 'acertr', 'Atru.ctg97_1.35' => 'acertr', 'AUR62004408' => 'cqu', 'AUR62010745' => 'cqu', 'AUR62021115' => 'cqu', 'AUR62021116' => 'cqu', 'AUR62022614' => 'cqu', 'AUR62031426' => 'cqu', 'AUR62031427' => 'cqu', 'BcaB01g00906' => 'bca', 'BcaB01g04211' => 'bca', 'BcaB03g13586' => 'bca', 'BcaB04g19847' => 'bca', 'BcaB05g21973' => 'bca', 'BcaB05g21974' => 'bca', 'BcaB05g21977' => 'bca', 'BcaB07g31534' => 'bca', 'BcaB08g35624' => 'bca', 'BcaC01g06197' => 'bca', 'BcaC01g06201' => 'bca', 'BcaC02g10360' => 'bca', 'BcaC03g14502' => 'bca', 'BcaC03g14503' => 'bca', 'BcaC03g14506' => 'bca', 'BcaC03g14510' => 'bca', 'BcaC03g14511' => 'bca', 'BcaC03g14512' => 'bca', 'BcaC04g20541' => 'bca', 'BcaC04g20551' => 'bca', 'BcaC04g20552' => 'bca', 'BcaC04g22663' => 'bca', 'BcaC07g42357' => 'bca', 'BcaC07g42426' => 'bca', 'BolC2t08077H' => 'bol', 'BolC2t08079H' => 'bol', 'BolC2t08080H' => 'bol', 'BolC3t14218H' => 'bol', 'BolC3t14220H' => 'bol', 'BolC4t24511H' => 'bol', 'BolC5t28841H' => 'bol', 'BolC7t44913H' => 'bol', 'BolC8t52882H' => 'bol', 'BolC9t53667H' => 'bol', 'BolC9t54590H' => 'bol', 'BolC9t57103H' => 'bol', 'BolC9t57104H' => 'bol', 'BolC9t57113H' => 'bol', 'BraA02t06224Z' => 'bra', 'BraA02t06228Z' => 'bra', 'BraA03t10848Z' => 'bra', 'BraA06t26392Z' => 'bra', 'BraA09t36323Z' => 'bra', 'BraA09t37051Z' => 'bra', 'BraA09t42248Z' => 'bra', 'BraA10t42328Z' => 'bra', 'BraA10t43102Z' => 'bra', 'BraA10t43103Z' => 'bra', 'BraA10t43104Z' => 'bra', 'C02p19400' => 'bna', 'C02p19420' => 'bna', 'C02p19460' => 'bna', 'C02p19470' => 'bna', 'C03p18170' => 'bna', 'C03p18190' => 'bna', 'C04p29770' => 'bna', 'C05p00520' => 'bna', 'C07p43850' => 'bna', 'C08p53680' => 'bna', 'C09p07520' => 'bna', 'C09p16930' => 'bna', 'C09p42220' => 'bna', 'C09p42230' => 'bna', 'C09p42340' => 'bna', 'CAN.G126.32' => 'can', 'CAN.G311.74' => 'can', 'CAN.G399.5' => 'can', 'CAN.G490.33' => 'can', 'CAN.G78.124' => 'can', 'CAN.G91.13' => 'can', 'CANSAT21G0231' => 'cansat', 'CANSAT21G0742' => 'cansat', 'CANSAT21G1038' => 'cansat', 'CANSAT21G1330' => 'cansat', 'CANSAT21G1682' => 'cansat', 'CANSAT26G0001' => 'cansat', 'CANSAT26G0002' => 'cansat', 'CANSAT56G2633' => 'cansat', 'CARHR000880' => 'chi', 'CARHR047020' => 'chi', 'CARHR189770' => 'chi', 'CARHR265680' => 'chi', 'CARHR265690' => 'chi', 'CARHR265700' => 'chi', 'CARHR265710' => 'chi', 'Carub.0001s0075' => 'cru', 'Carub.0002s0088' => 'cru', 'Carub.0002s0089' => 'cru', 'Carub.0006s2151' => 'cru', 'Carub.0008s1288' => 'cru', 'Carub.0008s1289' => 'cru', 'Carub.0008s1290' => 'cru', 'Carub.0008s1291' => 'cru', 'Carub.0008s1292' => 'cru', 'Carub.0008s1293' => 'cru', 'Ca_10716_v3' => 'car', 'Ca_10768_v3' => 'car', 'Ca_23544_v3' => 'car', 'Ca_24000_v3' => 'car', 'Ca_28433_v3' => 'car', 'Ca_30500_v3' => 'car', 'Cc02_g02320' => 'ccan', 'Cc02_g02980' => 'ccan', 'Cc02_g03490' => 'ccan', 'Cc02_g38520' => 'ccan', 'Cc08_g14460' => 'ccan', 'Cc08_g15210' => 'ccan', 'CDE04G0521' => 'cde', 'CDE05G2953' => 'cde', 'CDE08G1461' => 'cde', 'CDE09G0370' => 'cde', 'CDE11G0543' => 'cde', 'CDE11G0981' => 'cde', 'CDE12G0890' => 'cde', 'Ciclev10006198m.g' => 'ccl', 'Ciclev10006246m.g' => 'ccl', 'Ciclev10022806m.g' => 'ccl', 'Ciclev10023401m.g' => 'ccl', 'Ciclev10023788m.g' => 'ccl', 'CiPaw.01G066100' => 'cil', 'CiPaw.02G034100' => 'cil', 'CiPaw.03G106600' => 'cil', 'CiPaw.04G071200' => 'cil', 'CiPaw.05G261800' => 'cil', 'CiPaw.06G003700' => 'cil', 'CiPaw.11G130200' => 'cil', 'CiPaw.11G137700' => 'cil', 'CiPaw.12G089600' => 'cil', 'ClCG01G000900' => 'cla', 'ClCG01G002360' => 'cla', 'ClCG05G001270' => 'cla', 'ClCG06G003430' => 'cla', 'ClCG07G007940' => 'cla', 'ClCG09G012900' => 'cla', 'COL.COLO4_08366' => 'col', 'COL.COLO4_12772' => 'col', 'COL.COLO4_14312' => 'col', 'COL.COLO4_30303' => 'col', 'Cpa.g.c35429' => 'cpa', 'Cpa.g.sc107.116' => 'cpa', 'Cpa.g.sc107.117' => 'cpa', 'Cpa.g.sc107.119' => 'cpa', 'Cpa.g.sc107.55' => 'cpa', 'Cpa.g.sc356.1' => 'cpa', 'Cpa.g.sc631.1' => 'cpa', 'CsaV3_3G008630' => 'csa', 'CsaV3_3G049960' => 'csa', 'CsaV3_4G006080' => 'csa', 'CsaV3_5G001030' => 'csa', 'CsaV3_5G002420' => 'csa', 'CsaV3_5G002430' => 'csa', 'CsaV3_5G002440' => 'csa', 'CsaV3_5G002450' => 'csa', 'CsaV3_5G002460' => 'csa', 'CsaV3_6G000880' => 'csa', 'CSS0007233' => 'camsi', 'CSS0007996' => 'camsi', 'CSS0011803' => 'camsi', 'CSS0014464' => 'camsi', 'CSS0018123' => 'camsi', 'CSS0020590' => 'camsi', 'CSS0022422' => 'camsi', 'CSS0026531' => 'camsi', 'CSS0027395' => 'camsi', 'CSS0044132' => 'camsi', 'CSS0044655' => 'camsi', 'CSS0046435' => 'camsi', 'CSS0047087' => 'camsi', 'CSS0048498' => 'camsi', 'CSS0049347' => 'camsi', 'DCAR_006946' => 'dca', 'DCAR_010312' => 'dca', 'DCAR_010656' => 'dca', 'DCAR_014513' => 'dca', 'Dinv28383' => 'din', 'Dinv28439' => 'din', 'Dinv32517' => 'din', 'Dinv35259' => 'din', 'Dinv37600' => 'din', 'Dinv38901' => 'din', 'Dinv38957' => 'din', 'Dinv43859' => 'din', 'Duzib068G0001' => 'dzi', 'Duzib068G0051' => 'dzi', 'Duzib084G0072' => 'dzi', 'Duzib084G0621' => 'dzi', 'Duzib084G1049' => 'dzi', 'Duzib133G0414' => 'dzi', 'Duzib138G0627' => 'dzi', 'Duzib205G0003' => 'dzi', 'Duzib205G0231' => 'dzi', 'Duzib205G0442' => 'dzi', 'Duzib205G1151' => 'dzi', 'ECA232G0205' => 'eca', 'ECA232G1498' => 'eca', 'ECA233G2554' => 'eca', 'ECA234G3332' => 'eca', 'ECA236G0870' => 'eca', 'ECA236G0923' => 'eca', 'ECA246G0882' => 'eca', 'EL10Ac1g00360' => 'bvu', 'EL10Ac3g05412' => 'bvu', 'EL10Ac3g05413' => 'bvu', 'EL10Ac3g05414' => 'bvu', 'EL10Ac3g05415' => 'bvu', 'EL10Ac4g09237' => 'bvu', 'EL10Ac5g12831' => 'bvu', 'Eucgr.A02726' => 'egr', 'Eucgr.A02727' => 'egr', 'Eucgr.A02728' => 'egr', 'Eucgr.A02729' => 'egr', 'Eucgr.A02730' => 'egr', 'Eucgr.A02731' => 'egr', 'Eucgr.A02786' => 'egr', 'Eucgr.D01867' => 'egr', 'Eucgr.E00657' => 'egr', 'Eucgr.E00658' => 'egr', 'Eucgr.E00659' => 'egr', 'Eucgr.E00660' => 'egr', 'Eucgr.E00661' => 'egr', 'Eucgr.E00662' => 'egr', 'Eucgr.E00663' => 'egr', 'Eucgr.E00664' => 'egr', 'Eucgr.E00665' => 'egr', 'Eucgr.E00666' => 'egr', 'Eucgr.E00667' => 'egr', 'Eucgr.E00668' => 'egr', 'Eucgr.E00669' => 'egr', 'Eucgr.E00670' => 'egr', 'Eucgr.E00671' => 'egr', 'Eucgr.E00672' => 'egr', 'Eucgr.E00673' => 'egr', 'Eucgr.E00765' => 'egr', 'Eucgr.E00766' => 'egr', 'Eucgr.E00767' => 'egr', 'Eucgr.E00768' => 'egr', 'Eucgr.E00769' => 'egr', 'Eucgr.E00770' => 'egr', 'Eucgr.E00771' => 'egr', 'Eucgr.E00772' => 'egr', 'Eucgr.E00774' => 'egr', 'Eucgr.E00775' => 'egr', 'Eucgr.E00779' => 'egr', 'Eucgr.E01525' => 'egr', 'Eucgr.L02000' => 'egr', 'Eucgr.L02001' => 'egr', 'FAN01G1161' => 'fan', 'FAN01G1630' => 'fan', 'FAN01G2376' => 'fan', 'FAN03G1315' => 'fan', 'FAN03G1886' => 'fan', 'FAN03G2538' => 'fan', 'FAN03G2793' => 'fan', 'FAN03G3173' => 'fan', 'FAN04G1058' => 'fan', 'FAN06G0737' => 'fan', 'FAN06G0906' => 'fan', 'FAN06G1071' => 'fan', 'FAN06G1595' => 'fan', 'FAN06G1716' => 'fan', 'FAN06G4931' => 'fan', 'FAN08G2816' => 'fan', 'FAN10G0237' => 'fan', 'FAN10G2740' => 'fan', 'FAN10G2857' => 'fan', 'FAN10G3187' => 'fan', 'FAN10G3783' => 'fan', 'FAN10G4193' => 'fan', 'FAN13G0586' => 'fan', 'FAN18G1045' => 'fan', 'FvH4_5g03140' => 'fve', 'FvH4_7g15300' => 'fve', 'FvH4_7g29510' => 'fve', 'FvH4_7g30310' => 'fve', 'Glyma.05G211600' => 'gma', 'Glyma.07G065800' => 'gma', 'Glyma.08G017900' => 'gma', 'Glyma.09G130400' => 'gma', 'Glyma.09G130500' => 'gma', 'Glyma.09G130600' => 'gma', 'Glyma.09G130800' => 'gma', 'Glyma.09G130900' => 'gma', 'Glyma.09G131050' => 'gma', 'Glyma.09G131100' => 'gma', 'Glyma.09G138600' => 'gma', 'Glyma.09G255100' => 'gma', 'Glyma.10G230500' => 'gma', 'Glyma.10G230600' => 'gma', 'Glyma.10G235700' => 'gma', 'Glyma.16G032400' => 'gma', 'Glyma.16G177900' => 'gma', 'Glyma.16G178000' => 'gma', 'Glyma.16G178100' => 'gma', 'Glyma.16G178200' => 'gma', 'Glyma.16G178300' => 'gma', 'Glyma.16G178400' => 'gma', 'Glyma.16G178500' => 'gma', 'Glyma.16G189302' => 'gma', 'Glyma.18G238000' => 'gma', 'Glyma.20G162900' => 'gma', 'Gohir.A03G021100' => 'ghi', 'Gohir.A07G140100' => 'ghi', 'Gohir.A08G114600' => 'ghi', 'Gohir.A08G132700' => 'ghi', 'Gohir.A09G041900' => 'ghi', 'Gohir.A09G191400' => 'ghi', 'Gohir.A12G107200' => 'ghi', 'Gohir.A12G227100' => 'ghi', 'Gohir.A12G227300' => 'ghi', 'Gohir.A12G253700' => 'ghi', 'Gohir.A12G253800' => 'ghi', 'Gohir.A12G253900' => 'ghi', 'Gohir.A12G257600' => 'ghi', 'Gohir.D03G147700' => 'ghi', 'Gohir.D07G145300' => 'ghi', 'Gohir.D08G134800' => 'ghi', 'Gohir.D08G154100' => 'ghi', 'Gohir.D09G042800' => 'ghi', 'Gohir.D09G185900' => 'ghi', 'Gohir.D12G110400' => 'ghi', 'Gohir.D12G229400' => 'ghi', 'Gohir.D12G229600' => 'ghi', 'Gohir.D12G256000' => 'ghi', 'Gohir.D12G256100' => 'ghi', 'Gohir.D12G256200' => 'ghi', 'Gohir.D12G258900' => 'ghi', 'Gorai.001G157300' => 'gra', 'Gorai.003G155200' => 'gra', 'Gorai.004G138000' => 'gra', 'Gorai.004G160000' => 'gra', 'Gorai.006G049200' => 'gra', 'Gorai.006G208600' => 'gra', 'Gorai.008G119800' => 'gra', 'Gorai.008G245700' => 'gra', 'Gorai.008G245900' => 'gra', 'Gorai.008G274100' => 'gra', 'Gorai.008G274200' => 'gra', 'Gorai.008G277300' => 'gra', 'GSVIVG01019413001' => 'vvi', 'GSVIVG01026961001' => 'vvi', 'GSVIVG01028844001' => 'vvi', 'GSVIVG01028846001' => 'vvi', 'GSVIVG01028847001' => 'vvi', 'GSVIVG01028848001' => 'vvi', 'GSVIVG01028849001' => 'vvi', 'GSVIVG01028851001' => 'vvi', 'GSVIVG01028974001' => 'vvi', 'HanXRQChr02g0031231' => 'han', 'HanXRQChr02g0049301' => 'han', 'HanXRQChr02g0049341' => 'han', 'HanXRQChr04g0120751' => 'han', 'HanXRQChr06g0170311' => 'han', 'HanXRQChr06g0183821' => 'han', 'HanXRQChr09g0250491' => 'han', 'HanXRQChr09g0253611' => 'han', 'HanXRQChr12g0381131' => 'han', 'HanXRQChr13g0393911' => 'han', 'HanXRQChr15g0493181' => 'han', 'HanXRQChr15g0494131' => 'han', 'HanXRQChr15g0495531' => 'han', 'HanXRQChr16g0504071' => 'han', 'HanXRQChr16g0504101' => 'han', 'HanXRQChr16g0523301' => 'han', 'Haze_00053' => 'cav', 'Haze_05374' => 'cav', 'Haze_05386' => 'cav', 'Haze_15557' => 'cav', 'Hma1.2p1_0216F.1_g091030' => 'hma', 'Hma1.2p1_0270F.1_g108010' => 'hma', 'Hma1.2p1_0327F.1_g126470' => 'hma', 'Hma1.2p1_0623F.1_g191050' => 'hma', 'HPP92_002469' => 'vpl', 'HPP92_005345' => 'vpl', 'HPP92_008839' => 'vpl', 'HPP92_008872' => 'vpl', 'HPP92_012969' => 'vpl', 'HPP92_015078' => 'vpl', 'HPP92_021094' => 'vpl', 'HPP92_022269' => 'vpl', 'HPP92_022396' => 'vpl', 'HPP92_022561' => 'vpl', 'HPP92_027516' => 'vpl', 'Hund04743' => 'sun', 'Hund11438' => 'sun', 'Hund11712' => 'sun', 'Hund11713' => 'sun', 'Hund11714' => 'sun', 'Hund11715' => 'sun', 'Hund14275' => 'sun', 'Hund16675' => 'sun', 'Hund27245' => 'sun', 'Lalb_Chr01g0009321' => 'lal', 'Lalb_Chr02g0141261' => 'lal', 'Lalb_Chr03g0034561' => 'lal', 'Lalb_Chr03g0034901' => 'lal', 'Lalb_Chr03g0034911' => 'lal', 'Lalb_Chr03g0034921' => 'lal', 'Lalb_Chr05g0224511' => 'lal', 'Lalb_Chr06g0161361' => 'lal', 'Lalb_Chr10g0096691' => 'lal', 'Lalb_Chr16g0390261' => 'lal', 'Lalb_Chr17g0339091' => 'lal', 'Lalb_Chr19g0130601' => 'lal', 'Lalb_Chr21g0305041' => 'lal', 'Lj1g0011016' => 'lja', 'Lj2C179T5' => 'lonja', 'Lj2g0000091' => 'lja', 'Lj2g0005003' => 'lja', 'Lj2g0007696' => 'lja', 'Lj2g0016591' => 'lja', 'Lj2g0022662' => 'lja', 'Lj3g0025676' => 'lja', 'Lj4g0006505' => 'lja', 'Lj5g0019793' => 'lja', 'Lj5g0023591' => 'lja', 'Lj7P508T32' => 'lonja', 'Lj9C588T8' => 'lonja', 'Lsat_1_v5_gn_0_39001' => 'lsa', 'Lsat_1_v5_gn_3_31481' => 'lsa', 'Lsat_1_v5_gn_4_117321' => 'lsa', 'Lsat_1_v5_gn_6_4461' => 'lsa', 'Lsat_1_v5_gn_8_51440' => 'lsa', 'Lsat_1_v5_gn_9_55940' => 'lsa', 'Lsat_1_v5_gn_9_56680' => 'lsa', 'Lsat_1_v5_gn_9_81421' => 'lsa', 'Lsat_1_v5_gn_9_81441' => 'lsa', 'Lsat_1_v5_gn_9_82560' => 'lsa', 'Manes.01G252800' => 'mes', 'Manes.02G017600' => 'mes', 'Manes.05G030000' => 'mes', 'Manes.05G156200' => 'mes', 'Manes.06G147500' => 'mes', 'Manes.06G153100' => 'mes', 'Manes.14G021900' => 'mes', 'Manes.14G022000' => 'mes', 'Manes.14G026000' => 'mes', 'MBI02_g26998_MAGBIO' => 'mbi', 'MBI02_g29803_MAGBIO' => 'mbi', 'MBI04_g12643_MAGBIO' => 'mbi', 'MBI04_g18050_MAGBIO' => 'mbi', 'MBI04_g35361_MAGBIO' => 'mbi', 'MBI11_g22689_MAGBIO' => 'mbi', 'MBI11_g29824_MAGBIO' => 'mbi', 'MBI18_g30545_MAGBIO' => 'mbi', 'MBI18_g37164_MAGBIO' => 'mbi', 'MD01G1070300' => 'mdo', 'MD01G1201200' => 'mdo', 'MD01G1209000' => 'mdo', 'MD01G1209100' => 'mdo', 'MD01G1209200' => 'mdo', 'MD06G1080000' => 'mdo', 'MD06G1090200' => 'mdo', 'MD07G1131800' => 'mdo', 'MD07G1270100' => 'mdo', 'MD07G1270400' => 'mdo', 'MD07G1279400' => 'mdo', 'MD14G1111400' => 'mdo', 'Medtr0795s0020' => 'mtr', 'Medtr1173s0010' => 'mtr', 'Medtr1g099640' => 'mtr', 'Medtr1g099800' => 'mtr', 'Medtr1g099810' => 'mtr', 'Medtr1g099815' => 'mtr', 'Medtr1g100587' => 'mtr', 'Medtr1g102240' => 'mtr', 'Medtr3g434890' => 'mtr', 'Medtr3g434920' => 'mtr', 'Medtr3g434960' => 'mtr', 'Medtr3g435000' => 'mtr', 'Medtr6g045257' => 'mtr', 'Medtr6g049260' => 'mtr', 'Medtr6g049280' => 'mtr', 'Medtr6g049320' => 'mtr', 'Medtr6g051680' => 'mtr', 'Medtr6g051690' => 'mtr', 'Medtr7g079110' => 'mtr', 'Medtr7g451200' => 'mtr', 'Medtr7g451210' => 'mtr', 'Medtr8g028615' => 'mtr', 'Medtr8g098915' => 'mtr', 'MELO3C003320.2' => 'cme', 'MELO3C005709.2' => 'cme', 'MELO3C005710.2' => 'cme', 'MELO3C005711.2' => 'cme', 'MELO3C005712.2' => 'cme', 'MELO3C005841.2' => 'cme', 'MELO3C006083.2' => 'cme', 'MELO3C016341.2' => 'cme', 'MELO3C021183.2' => 'cme', 'Migut.A00724' => 'egut', 'Migut.B01794' => 'egut', 'Migut.E01208' => 'egut', 'Migut.E01209' => 'egut', 'Migut.F00284' => 'egut', 'Migut.F00338' => 'egut', 'Migut.F01117' => 'egut', 'Migut.F01118' => 'egut', 'Migut.J01206' => 'egut', 'Migut.J01207' => 'egut', 'Migut.M01053' => 'egut', 'Migut.N01465' => 'egut', 'MSTRG.15635' => 'ama', 'MSTRG.17297' => 'ama', 'MSTRG.1837' => 'ama', 'MSTRG.20860' => 'ama', 'MSTRG.27080' => 'ama', 'MSTRG.27081' => 'ama', 'MSTRG.4835' => 'ama', 'MSTRG.8457' => 'ama', 'MSTRG.8706' => 'ama', 'MSTRG.8708' => 'ama', 'MSTRG.8735' => 'ama', 'MSTRG.91' => 'ama', 'Nitab4.5_0000200g0130' => 'nta', 'Nitab4.5_0000690g0010' => 'nta', 'Nitab4.5_0000915g0200' => 'nta', 'Nitab4.5_0001842g0020' => 'nta', 'Nitab4.5_0002117g0010' => 'nta', 'Nitab4.5_0002262g0040' => 'nta', 'Nitab4.5_0003015g0040' => 'nta', 'Nitab4.5_0003072g0030' => 'nta', 'Nitab4.5_0003779g0140' => 'nta', 'Nitab4.5_0004051g0050' => 'nta', 'Nitab4.5_0005743g0010' => 'nta', 'Nitab4.5_0006014g0030' => 'nta', 'Nitab4.5_0007116g0010' => 'nta', 'Nitab4.5_0009737g0010' => 'nta', 'Nitab4.5_0009879g0010' => 'nta', 'Nn1g01468' => 'nnu', 'Nn1g01666' => 'nnu', 'Nn1g02303' => 'nnu', 'Nn1g04908' => 'nnu', 'Nn5g30881' => 'nnu', 'Nn6g32425' => 'nnu', 'Nn6g33494' => 'nnu', 'Nn6g35654' => 'nnu', 'Nn8g41205' => 'nnu', 'Oeu018959.1' => 'oeu', 'Oeu024221.1' => 'oeu', 'Oeu025130.1' => 'oeu', 'Oeu027869.1' => 'oeu', 'Oeu036033.1' => 'oeu', 'Oeu036592.1' => 'oeu', 'Oeu036891.1' => 'oeu', 'Oeu049845.1' => 'oeu', 'Oeu056258.1' => 'oeu', 'Os03g0111400' => 'osa', 'Os03g0126700' => 'osa', 'Os04g0533900' => 'osa', 'Os04g0667600' => 'osa', 'Os10g0506100' => 'osa', 'Os10g0532300' => 'osa', 'Os12g0421000' => 'osa', 'Peaxi162Scf00020g00131' => 'pax', 'Peaxi162Scf00102g00166' => 'pax', 'Peaxi162Scf00102g01540' => 'pax', 'Peaxi162Scf00403g00835' => 'pax', 'Peaxi162Scf00444g00231' => 'pax', 'Peaxi162Scf00444g00840' => 'pax', 'Peaxi162Scf00585g00317' => 'pax', 'Peaxi162Scf00618g00615' => 'pax', 'PGR031G0601' => 'pgr', 'PGR031G1465' => 'pgr', 'PGR031G3795' => 'pgr', 'PGR042G0687' => 'pgr', 'PGR042G0975' => 'pgr', 'PGR042G1666' => 'pgr', 'PGR042G2454' => 'pgr', 'PGR042G3063' => 'pgr', 'PGR142G1784' => 'pgr', 'PGSC0003DMG400000063' => 'stu', 'PGSC0003DMG400009507' => 'stu', 'PGSC0003DMG400014342' => 'stu', 'PGSC0003DMG400019410' => 'stu', 'PGSC0003DMG400021650' => 'stu', 'PGSC0003DMG400031424' => 'stu', 'Phvul.002G292900' => 'pvu', 'Phvul.004G106900' => 'pvu', 'Phvul.004G107001' => 'pvu', 'Phvul.004G107100' => 'pvu', 'Phvul.004G107200' => 'pvu', 'Phvul.004G116400' => 'pvu', 'Phvul.007G070001' => 'pvu', 'Phvul.007G070200' => 'pvu', 'Phvul.007G074600' => 'pvu', 'Phvul.007G074800' => 'pvu', 'Phvul.007G074900' => 'pvu', 'Phvul.007G075000' => 'pvu', 'Phvul.007G075100' => 'pvu', 'Phvul.008G058500' => 'pvu', 'Phvul.010G103800' => 'pvu', 'Potri.001G099500' => 'ptr', 'Potri.002G163400' => 'ptr', 'Potri.003G132200' => 'ptr', 'Potri.004G073000' => 'ptr', 'Potri.004G073100' => 'ptr', 'Potri.008G220100' => 'ptr', 'Potri.012G141500' => 'ptr', 'Potri.014G089700' => 'ptr', 'Potri.015G144200' => 'ptr', 'Potri.017G145516' => 'ptr', 'Potri.017G147000' => 'ptr', 'Potri.017G147200' => 'ptr', 'Potri.017G147300' => 'ptr', 'Potri.017G147400' => 'ptr', 'Potri.017G147500' => 'ptr', 'Potri.017G147700' => 'ptr', 'Prupe.2G176600' => 'ppe', 'Prupe.2G294600' => 'ppe', 'Prupe.2G301600' => 'ppe', 'Prupe.4G228300' => 'ppe', 'Prupe.5G106100' => 'ppe', 'Psat0s1271g0080' => 'psa', 'Psat3g105880' => 'psa', 'Psat4g212040' => 'psa', 'Psat6g195960' => 'psa', 'Psat6g196000' => 'psa', 'Psat6g196040' => 'psa', 'Psat6g196120' => 'psa', 'Psat6g198560' => 'psa', 'Psat7g030320' => 'psa', 'Psat7g192880' => 'psa', 'Psat7g192960' => 'psa', 'PSO063G7056' => 'pso', 'PSO170G5302' => 'pso', 'PSO170G5475' => 'pso', 'PSO229G0082' => 'pso', 'PSO229G0125' => 'pso', 'PSO381G0013' => 'pso', 'PSO381G0014' => 'pso', 'PSO478G0434' => 'pso', 'PSO478G0459' => 'pso', 'PSO478G0464' => 'pso', 'PSO478G0534' => 'pso', 'PSO478G1537' => 'pso', 'PSO478G1713' => 'pso', 'PSO478G1901' => 'pso', 'PSO478G2148' => 'pso', 'PSO478G2500' => 'pso', 'PSO478G2661' => 'pso', 'PSO478G3266' => 'pso', 'PSO478G3311' => 'pso', 'PSO478G3873' => 'pso', 'PSO478G4469' => 'pso', 'PSO478G4812' => 'pso', 'PSO478G5073' => 'pso', 'PSO782G0004' => 'pso', 'PSO782G0981' => 'pso', 'PSO782G1183' => 'pso', 'PSO782G1393' => 'pso', 'PSO782G1566' => 'pso', 'PSO782G1585' => 'pso', 'PSO782G2562' => 'pso', 'PSO782G2867' => 'pso', 'PSO782G3265' => 'pso', 'PSO782G3455' => 'pso', 'PSO782G3559' => 'pso', 'PSO782G3889' => 'pso', 'PSO782G4438' => 'pso', 'PSO782G4468' => 'pso', 'PSO782G4991' => 'pso', 'PSO782G5097' => 'pso', 'PSO782G5558' => 'pso', 'PSO782G5608' => 'pso', 'PSO782G5718' => 'pso', 'QL04p055236' => 'qlo', 'QL04p055249' => 'qlo', 'QL04p055265' => 'qlo', 'QL09p012661' => 'qlo', 'QL09p014173' => 'qlo', 'QL12p018251' => 'qlo', 'QL12p031860' => 'qlo', 'RcHm_v2.0_Chr1g0357621' => 'rch', 'RcHm_v2.0_Chr1g0377351' => 'rch', 'RcHm_v2.0_Chr1g0378461' => 'rch', 'RcHm_v2.0_Chr7g0196641' => 'rch', 'Rhsim01G0166600' => 'rsi', 'Rhsim01G0167000' => 'rsi', 'Rhsim02G0235300' => 'rsi', 'Rhsim07G0011000' => 'rsi', 'Rhsim09G0013200' => 'rsi', 'Sabra03G0094700' => 'sbr', 'Sabra12G0106400' => 'sbr', 'SalBow2G0992' => 'sbo', 'SalBow4G0149' => 'sbo', 'SalBow4G2098' => 'sbo', 'SalBow4G3096' => 'sbo', 'SalBow5G1761' => 'sbo', 'Sc01g0009810' => 'sci', 'Sc19g0001200' => 'sci', 'Sc19g0001210' => 'sci', 'Sc19g0001500' => 'sci', 'Sc22g0005310' => 'sci', 'Sc22g0005320' => 'sci', 'Sc23g0002560' => 'sci', 'Sed0001776' => 'sed', 'Sed0002418' => 'sed', 'Sed0003368' => 'sed', 'Sed0004002' => 'sed', 'Sed0005218' => 'sed', 'Sed0007738' => 'sed', 'Sed0009535' => 'sed', 'Sed0010299' => 'sed', 'Sed0011612' => 'sed', 'Sed0012277' => 'sed', 'Sed0016173' => 'sed', 'Sed0019884' => 'sed', 'Sed0022402' => 'sed', 'Sed0023456' => 'sed', 'Sed0027063' => 'sed', 'Sed0027426' => 'sed', 'SEGI_01450' => 'sgi', 'SEGI_02398' => 'sgi', 'SEGI_04138' => 'sgi', 'SEGI_04302' => 'sgi', 'SEGI_06320' => 'sgi', 'SEGI_10272' => 'sgi', 'SEGI_10829' => 'sgi', 'SEGI_12155' => 'sgi', 'SEGI_17122' => 'sgi', 'SEGI_17216' => 'sgi', 'SEGI_19372' => 'sgi', 'SEGI_21087' => 'sgi', 'SEGI_25445' => 'sgi', 'SEGI_28355' => 'sgi', 'SEGI_29001' => 'sgi', 'SEGI_40338' => 'sgi', 'SGA_v2.0_scaffold111G31477' => 'sas', 'SGA_v2.0_scaffold11G05684' => 'sas', 'SGA_v2.0_scaffold144G35904' => 'sas', 'SGA_v2.0_scaffold173G39143' => 'sas', 'SGA_v2.0_scaffold44G16724' => 'sas', 'SGA_v2.0_scaffold44G16755' => 'sas', 'SGA_v2.0_scaffold4G02287' => 'sas', 'SGA_v2.0_scaffold60G21045' => 'sas', 'SGA_v2.0_scaffold85G26616' => 'sas', 'Solyc03g007870.3' => 'sly', 'Solyc03g025800.3' => 'sly', 'Solyc05g049990.4' => 'sly', 'Solyc06g036310.3' => 'sly', 'Solyc10g011960.3' => 'sly', 'Sopen01g038860' => 'spe', 'Sopen03g003810' => 'spe', 'Sopen03g004610' => 'spe', 'Sopen05g028380' => 'spe', 'Sopen06g012100' => 'spe', 'Sopen10g005730' => 'spe', 'Sp1g00820' => 'spa', 'Sp2g00730' => 'spa', 'Sp2g23460' => 'spa', 'Sp6g09500' => 'spa', 'Sp6g14870' => 'spa', 'Sp6g14880' => 'spa', 'Sp6g14900' => 'spa', 'Sp6g14910' => 'spa', 'TAR367G0009' => 'tar', 'TAR374G1069' => 'tar', 'TAR375G0562' => 'tar', 'TAR381G0545' => 'tar', 'TAR629G3317' => 'tar', 'TAR629G3368' => 'tar', 'TAR636G0390' => 'tar', 'TAR636G0645' => 'tar', 'TAR636G2011' => 'tar', 'TAR636G2619' => 'tar', 'TAR636G2948' => 'tar', 'THA.LOC104798928' => 'tha', 'THA.LOC104801392' => 'tha', 'THA.LOC104811950' => 'tha', 'THA.LOC104811951' => 'tha', 'THA.LOC104818169' => 'tha', 'THA.LOC104825116' => 'tha', 'Thecc.01G353100' => 'tca', 'Thecc.03G177000' => 'tca', 'Thecc.03G185200' => 'tca', 'Thecc.03G276200' => 'tca', 'Thecc.03G286000' => 'tca', 'Thhalv10014994m.g' => 'esa', 'Thhalv10015053m.g' => 'esa', 'Thhalv10023803m.g' => 'esa', 'TPR.G10746' => 'tpr', 'TPR.G12746' => 'tpr', 'TPR.G15007' => 'tpr', 'TPR.G26971' => 'tpr', 'TPR.G28158' => 'tpr', 'TPR.G33502' => 'tpr', 'TPR.G33513' => 'tpr', 'TPR.G33527' => 'tpr', 'TPR.G33533' => 'tpr', 'TPR.G33546' => 'tpr', 'TPR.G33547' => 'tpr', 'TPR.G7762' => 'tpr', 'TPR.G7773' => 'tpr', 'TWI12G0300' => 'twi', 'TWI14G0105' => 'twi', 'TWI14G0448' => 'twi', 'TWI15G1017' => 'twi', 'TWI23G0254' => 'twi', 'TWI39G0972' => 'twi', 'TWI39G1228' => 'twi', 'TWI59G1362' => 'twi', 'unitig_0.g1766' => 'ugi', 'unitig_0.g2477' => 'ugi', 'unitig_26.g9363' => 'ugi', 'unitig_32.g11311' => 'ugi', 'unitig_37.g12238' => 'ugi', 'unitig_37.g12541' => 'ugi', 'unitig_46.g18544' => 'ugi', 'unitig_46.g18807' => 'ugi', 'unitig_52.g17745' => 'ugi', 'unitig_736.g22825' => 'ugi', 'unitig_749.g13653' => 'ugi', 'vmacro06623' => 'vma', 'vmacro06679' => 'vma', 'vmacro11405' => 'vma', 'vmacro11406' => 'vma', 'vmacro13235' => 'vma', 'vmacro20899' => 'vma', 'VMungo0251G1348' => 'vmu', 'VMungo0331G1788' => 'vmu', 'VMungo0464G1339' => 'vmu', 'VMungo0464G1709' => 'vmu', 'VMungo0464G1937' => 'vmu', 'VMungo0464G2100' => 'vmu', 'VMungo0464G2180' => 'vmu', 'VMungo0602G0001' => 'vmu', 'VMungo0720G0520' => 'vmu', 'VMungo0720G2224' => 'vmu', 'VMungo1383G2717' => 'vmu', 'Zm00001eb021790' => 'zma', 'Zm00001eb044060' => 'zma', 'Zm00001eb066960' => 'zma', 'Zm00001eb404100' => 'zma', 'Zm00001eb433150' => 'zma' ) $gf_id = 'HOM05D000607' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000607' ) $data_identifier = 'HOM05D000607' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 2, 'arhy' => (int) 23, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 13, 'cqu' => (int) 7, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 6, 'cde' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 15, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 39, 'fan' => (int) 24, 'fve' => (int) 4, 'gma' => (int) 26, 'ghi' => (int) 26, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 16, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 13, 'lja' => (int) 10, 'lonja' => (int) 3, 'lsa' => (int) 10, 'mes' => (int) 9, 'mbi' => (int) 9, 'mdo' => (int) 12, 'mtr' => (int) 23, 'cme' => (int) 9, 'egut' => (int) 12, 'ama' => (int) 12, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 15, 'ptr' => (int) 16, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 42, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 2, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 16, 'sgi' => (int) 16, 'sas' => (int) 9, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 13, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1